DNA Sequences from Formalin-Fixed Nematodes: Integrating Molecular and Morphological Approaches to Taxonomy

To effectively integrate DNA sequence analysis and classical nematode taxonomy, we must be able to obtain DNA sequences from formalin-fixed specimens. Microdissected sections of nematodes were removed from specimens fixed in formalin, using standard protocols and without destroying morphological features. The fixed sections provided sufficient template for multiple polymerase chain reaction-based DNA sequence analyses.     

Ephelides are More Related to Pigmentary Constitutional Host Factors than Solar Lentigines

Ephelides and solar lentigines are benign pigmented spots, which are currently associated with an increased risk of skin cancer. These two pigmented spots are known to be discriminated by their clinical, histological, and electron microscopic characteristics, even though occasional misclassification can occur because of their similarity. It has also been questioned whether these spots are not one and the same. In this study, we have attempted to differentiate between these two pigmented spots with the use of a standardized protocol for clinical examinations on 272 healthy volunteers, paying particular consideration to their pigmentary and constitutional host factors. We found that solar lentigines 1) are more prevalent than ephelides, 2) increase in prevalence and number with higher age, and 3) are most prevalent on the trunk and occur more frequently in males than in females. A trend is also observed whereby ephelides 1) loose their prevalence with age, 2) become equally distributed on the face, arms, and trunk, and 3) occur more frequently in females. An intimate association of ephelides, but not solar lentigines, has been found with hair color and skin type. All of these findings are in agreement with most of those reported in the literature, supporting the view that ephelides and solar lentigines are different types of pigmented lesions.     

Suppression of Embryogenesis and Hatching in Meloidogyne javanica by Thermal Stress

Embryogenes is and hatching of eggs of Meloidogyne javanica were suppressed by brief heat treatment (46 C for 10 min). The period of suppression or arrested development differs according to the stage of development of the nematode when heat treatment is applied. The effect on hatching is much more pronounced than on embryogenesis.     

Successful captive breeding of Mitchell's water monitor,Varanus mitchelli (Mertens 1958), at Perth Zoo

Mitchell's water monitors (Varanus mitchelli) have been maintained on display at Perth Zoo since 1997. They are generally a timid species but have been maintained and bred in a mixed species water feature exhibit. In this article we describe their captive management and behavior with an insight into their reproductive biology. Between 2002 and 2005, 11 clutches were laid ranging from 13 to 27 (X? = 20) eggs from one female. Egg size ranged between 3.00 and 6.08 g (X? = 4.77 g) in weight, 22.8 and 31.9 mm (X? = 28.3 mm) in length, and 11.1 and 19.3 mm (X? = 17.1 mm) in width. Oviposition included double and triple clutches ranging between 41 and 60 days apart (X? = 48 days), events n = 6. Four clutches were incubated at three different temperatures and hatchlings emerged after 157–289 days. The weight of the hatchlings ranged between 2.60 and 4.52 g (X? = 4.34 g). Total length ranged between 140.1 and 178.0 mm (X? = 165.9 mm) and snout–vent length ranged from 53.8 to 70.0 (X? = 64.4 mm). Juvenile growth and development information is presented from hatching through to approximately 3 years of age. Zoo Biol 29:615–625, 2010. © 2009 Wiley‐Liss, Inc.     

Internal lipid synthesis and vesicle growth as a step toward self-reproduction of the minimal cell

One of the major properties of the semi-synthetic minimal cell, as a model for early living cells, is the ability to self-reproduce itself, and the reproduction of the boundary layer or vesicle compartment is part of this process. A minimal bio-molecular mechanism based on the activity of one single enzyme, the FAS-B (Fatty Acid Synthase) Type I enzyme from Brevibacterium ammoniagenes, is encapsulated in 1-palmitoyl-2oleoyl-sn-glycero-3-phosphatidylcholine (POPC) liposomes to control lipid synthesis. Consequently molecules of palmitic acid released from the FAS catalysis, within the internal lumen, move toward the membrane compartment and become incorporated into the phospholipid bilayer. As a result the vesicle membranes change in lipid composition and liposome growth can be monitored. Here we report the first experiments showing vesicles growth by catalysis of one enzyme only that produces cell boundary from within. This is the prototype of the simplest autopoietic minimal cell.     

Ideas in theoretical biology

The potential and realized impact of Bohm's views on biology are briefly discussed.     

The sweet jelly of Combretum lanceolatum flowers (Combretaceae): a cornucopia resource for bird pollinators in the Pantanal, western Brazil

 The pollination biology of the neotropical scandent shrub Combretum lanceolatum was studied in the seasonally-flooded Pantanal region in western Brazil. This plant bears horizontally oriented inflorescences, whose yellowish green flowers begin to expand at dusk and are fully open at dawn. Instead of fluid nectar the flowers produce sweet gelatinous secretion in form of pellets. The glandular complex of the flower is composed of the inner wall of the receptacle and its tubular extension, being equivalent to the nectariferous disk of the nectar-producing species within the genus. The jelly is produced at night, contains mannan and is imbibed by free hexoses. It originates by swelling and disintegration of the inner wall, after contact with the nectar generated concomitantly in the mesophyll. Combretum lanceolatum is unique within the genus in its production of jelly pellets instead of liquid nectar. A new term, the jelly-flower, is proposed for flowers with this kind of reward. The pellet is not replaced once removed by a bird, and thus resembles a fruit in its availability to consumers, another unique feature that distinguishes this species within the genus. The jelly pellets offered by the many flowered branches attract a great diversity of bird visitors (28 species from eight families), which feed on this copious food resource and pollinate the flowers. The most effective pollinators probably are thrushes, tanagers, and orioles. Flocking parakeets and macaws sometimes feed on the petals, thus acting as flower plunderers. Combretum lanceolatum presents a high fruit set under natural conditions, which likely favours its spreading and becoming a weed species. Received July 11, 2000 Accepted November 18, 2000     

Multiomic Metabolic Enrichment Network Analysis Reveals Metabolite–Protein Physical Interaction Subnetworks Altered in Cancer

Metabolism is recognized as an important driver of cancer progression and other complex diseases, but global metabolite profiling remains a challenge. Protein expression profiling is often a poor proxy since existing pathway enrichment models provide an incomplete mapping between the proteome and metabolism. To overcome these gaps, we introduce multiomic metabolic enrichment network analysis (MOMENTA), an integrative multiomic data analysis framework for more accurately deducing metabolic pathway changes from proteomics data alone in a gene set analysis context by leveraging protein interaction networks to extend annotated metabolic models. We apply MOMENTA to proteomic data from diverse cancer cell lines and human tumors to demonstrate its utility at revealing variation in metabolic pathway activity across cancer types, which we verify using independent metabolomics measurements. The novel metabolic networks we uncover in breast cancer and other tumors are linked to clinical outcomes, underscoring the pathophysiological relevance of the findings.     

利用Ecopath模型评价鲢鳙放养对千岛湖生态系统的影响

“保水渔业”是中国控制"水华"暴发等生态灾变的措施之一，其结果存在较大的不确定性。在浙江省的新安江水库（千岛湖），"保水渔业"的实施带来了水质改善和渔业增产的双重效果。但在生态系统自组织层面，这种人工干预手段引起的生态系统结构化效应的研究，尚未真正展开。基于2008-2010年千岛湖的生态和渔业资源调查数据，应用EwE （V6.6）构建了2010年千岛湖生态系统的Ecopath模型，并将其与2004和2016年的模型进行对照，分析了千岛湖生态系统在鲢、鳙鱼放养下的变化。千岛湖生态系统在3个年份均为4个整合营养级，营养能流分布成典型的金字塔型，且营养流总量中流向碎屑的占比很大，营养级Ⅰ、Ⅱ的能量被利用得不够充分；除鲢、鳙鱼外大部分鱼类的生物量逐渐下降，浮游植物和碎屑的生物量增多；系统的初级生产力和规模得到了一定提升，但总体的能量转换效率有所降低。在一些和系统成熟度、复原力和稳定性密切相关的参数方面，总初级生产量/总呼吸量增加，Finn氏循环指数和Finn氏平均路径长度逐渐降低，3个年份的连接指数（CI）分别为0.223、0.219、0.263，系统杂食指数（SOI）分别为0.087、0.102和0.131。研究分析表明，长期的鲢、鳙鱼放养使千岛湖的食物网结构发生了较大的变动，生态系统的营养交互关系不够复杂，成熟度和稳定性有所下降。千岛湖作为一个由水库发展而来的淡水水体，食物网关系本身就较为简单。因此，未来需要避免过多的人为干扰，并基于生态学原理更系统地进行修复工作。